You need to install rna-pdb-tools (http://rna-pdb-tools.readthedocs.io/en/latest/) first.

Draw VARNA-based image of RNA secondary structure




Keep exactly the same syntax as in the example above and below.

The syntax:

[ss:/name of your seq/]
# ^ not <pre/> nor <pre>. Keep a new line after this syntax. So don't do:



# ^ this could be fixed at some point


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Draw secondary structure using VARNA.


to each image ss_ is added at the beginning of the image file

1. if the line after </pre> has ![ it means that there is an image already, don’t generate new one. And of course, it means if you remove this line, the image will be regenerated.

  1. if [!danger] also skip generation images.

Should I overwrite a file ? By default no! Use [ss:file:t] # to set overwrite to true

to get a VARNA-drawn image of secondary structure.