You need to install rna-pdb-tools (http://rna-pdb-tools.readthedocs.io/en/latest/) first.
Draw VARNA-based image of RNA secondary structure¶
<pre>[ss:rna] UUUCUGUAUAAUGCCGAUAAUAAGGUUCGGCAGUUUCUACCAAACAGCCGUAAACUGUUUGACUACAGUAA ((.(((((...((((((.........))))))........(((((((.......)))))))..))))).)) </pre>
Keep exactly the same syntax as in the example above and below.
<pre> [ss:/name of your seq/] /seq/ /ss/ </pre> # ^ not <pre/> nor <pre>. Keep a new line after this syntax. So don't do: </pre> <pre> but </pre> <pre> # ^ this could be fixed at some point
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Draw secondary structure using VARNA.
to each image ss_ is added at the beginning of the image file
1. if the line after </pre> has ![ it means that there is an image already, don’t generate new one. And of course, it means if you remove this line, the image will be regenerated.
- if [!danger] also skip generation images.
Should I overwrite a file ? By default no! Use [ss:file:t] # to set overwrite to true
to get a VARNA-drawn image of secondary structure.